PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010089160.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family C2H2
Protein Properties Length: 291aa    MW: 31058.2 Da    PI: 4.56
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010089160.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.50.00043268290223
                     EETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                     +C+ C+k+F +   L +H +  H
  XP_010089160.1 268 SCKSCSKTFASDGALDSHTKAkH 290
                     7*****************99877 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.492267291IPR007087Zinc finger, C2H2
PROSITE patternPS000280269290IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009294Biological ProcessDNA mediated transformation
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0010162Biological Processseed dormancy process
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005618Cellular Componentcell wall
GO:0005730Cellular Componentnucleolus
GO:0005739Cellular Componentmitochondrion
GO:0005774Cellular Componentvacuolar membrane
GO:0005829Cellular Componentcytosol
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MEFWGVEVKA GEPLTVVPDD AFIIHLSQAC LGESETKSKE PILLSVKVAD KKFVLGTLSL  60
EKIPQLTFDL VFEKEFELTH NWKHGSDESE EEEDIPPQAI QNGKGGPKVG LAKPAAAKTN  120
AAKPESTEKP KVKVVEPSKD EDGESDEDSD ESDEDDSDDE MVSSGDESDE DMLGGDSDDA  180
EDKDEEDDEA TPKKLELSKK RANDSADKTP VPAKKPKAAA SPKSEGKKVV HTATPHPAKK  240
AGKTSATGDK SKDQQTPKSG GKSAGKISCK SCSKTFASDG ALDSHTKAKH A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010089160.10.0Histone deacetylase HDT1
TrEMBLW9R3F00.0W9R3F0_9R
STRINGPGSC0003DMT4000216441e-64(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF10253067
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44750.21e-30histone deacetylase 3